You clone the repository as a whole. If you want a branch other than the master one then you have to do something like
git clone --branch <branchname> <remote-repo-url>.
Alternatively, I usually clone the repository and then do a checkout with
git checkout -t origin/01deg_jra55v13_ryf9091
I can’t see any in /g/data/ik11/outputs/access-om2-01/
Yes that looks like a problem. I’ve asked @AndyHoggANU to push up the latest configurations for that simulation.
@mauricehuguenin perhaps you can help here? What configuration are you using for your 1/10th-degree RYF control run for the ENSO work?
This kind of issue is exactly why we want to put together the wiki at ACCESS-OM2 Control Experiments.