# \#conda **URL:** https://forum.access-hive.org.au/tag/conda/18.md [Latest](https://forum.access-hive.org.au/latest.md) · [Categories](https://forum.access-hive.org.au/categories.md) · [Tags](https://forum.access-hive.org.au/tags.md) --- ## [Ants module availability in xp65 analysis3 kernels](https://forum.access-hive.org.au/t/ants-module-availability-in-xp65-analysis3-kernels/5149)
**Author:** [@bethanwhite](https://forum.access-hive.org.au/u/bethanwhite)\ **Replies:** 36\ **Last updated:** [21 August 2026 05:40 UTC](https://forum.access-hive.org.au/t/ants-module-availability-in-xp65-analysis3-kernels/5149 "2026-08-21T05:40:04Z")
The ants module is a key piece of software not just for running Met Office family models but also for working on analysis of their outputs. Having transitioned from hh5 to xp65, I’ve been struggling to find out where an… --- ## [Reading CTD data in analysis 3-26.XX environments using pycnv](https://forum.access-hive.org.au/t/reading-ctd-data-in-analysis-3-26-xx-environments-using-pycnv/6151)
**Author:** [@olerieke](https://forum.access-hive.org.au/u/olerieke)\ **Replies:** 3\ **Last updated:** [31 March 2026 09:03 UTC](https://forum.access-hive.org.au/t/reading-ctd-data-in-analysis-3-26-xx-environments-using-pycnv/6151 "2026-03-31T09:03:30Z")
Hi all, especially @rbeucher, I’m using the pycnv package for reading CTD data and it does not work any longer in the analysis 3-26.XX environments due to a dependence on “pkg\_resources package” which has been removed. … --- ## [Issues with new conda/analysis3 importing netCDF4](https://forum.access-hive.org.au/t/issues-with-new-conda-analysis3-importing-netcdf4/6047)
**Author:** [@srennie](https://forum.access-hive.org.au/u/srennie)\ **Replies:** 3\ **Last updated:** [19 March 2026 03:40 UTC](https://forum.access-hive.org.au/t/issues-with-new-conda-analysis3-importing-netcdf4/6047 "2026-03-19T03:40:16Z")
Description of request: Environment: NCI gadi login node conda/analysis3 What executed: $ module load conda/analysis3 $ python \>\>\> from netCDF4 import Dataset Actual results: Traceback (most recent call last): Fil… --- ## [Important Announcement – New \`analysis3-26.03\` Conda Environment](https://forum.access-hive.org.au/t/important-announcement-new-analysis3-26-03-conda-environment/6050)
**Author:** [@rbeucher](https://forum.access-hive.org.au/u/rbeucher)\ **Replies:** 0\ **Last updated:** [13 March 2026 00:43 UTC](https://forum.access-hive.org.au/t/important-announcement-new-analysis3-26-03-conda-environment/6050 "2026-03-13T00:43:27Z")
Dear ACCESS community, The new analysis3-26.03 conda environment is now available. Highlights Major stack upgrades: Python 3.12, NumPy 2, OpenMPI 5.0.8 ANTS packages removed due to tight dependency constraints regiona… --- ## [Issue with custom conda env (built on top of xp65) in PBS job](https://forum.access-hive.org.au/t/issue-with-custom-conda-env-built-on-top-of-xp65-in-pbs-job/5748)
**Author:** [@mblack](https://forum.access-hive.org.au/u/mblack)\ **Replies:** 2\ **Last updated:** [6 January 2026 23:35 UTC](https://forum.access-hive.org.au/t/issue-with-custom-conda-env-built-on-top-of-xp65-in-pbs-job/5748 "2026-01-06T23:35:14Z")
Hi, I have a (likely simple) question that someone may be able to assist with. I have created my own custom python environment built on top of xp65 following the CLEX blog, but having issues with this working in a PBS j… --- ## [Analysis3 not working with R](https://forum.access-hive.org.au/t/analysis3-not-working-with-r/5246)
**Author:** [@pearseb](https://forum.access-hive.org.au/u/pearseb)\ **Replies:** 10\ **Last updated:** [18 September 2025 07:22 UTC](https://forum.access-hive.org.au/t/analysis3-not-working-with-r/5246 "2025-09-18T07:22:17Z")
Hi all, I’m trying to run an interactive session on the ARE with Rstudio. I’m assuming that the conda/analysis3 also manages R packages as well as python, and so i was wanting to use it. However, it looks like using th… --- ## [Conda init problems](https://forum.access-hive.org.au/t/conda-init-problems/5129)
**Author:** [@dkhutch](https://forum.access-hive.org.au/u/dkhutch)\ **Replies:** 7\ **Last updated:** [26 August 2025 04:02 UTC](https://forum.access-hive.org.au/t/conda-init-problems/5129 "2025-08-26T04:02:31Z")
Hi, I was trying to create a custom conda environment. (I was hoping to install packages that don’t seem to be compatible with conda/analysis3.) If I try to run conda init I get the same kind of errors that @mmr0 got in… --- ## [Shapely fails to import in analysis3-25.04: undefined symbol GEOSGeom\_getExtent\_r](https://forum.access-hive.org.au/t/shapely-fails-to-import-in-analysis3-25-04-undefined-symbol-geosgeom-getextent-r/4518)
**Author:** [@dpath2o](https://forum.access-hive.org.au/u/dpath2o)\ **Replies:** 6\ **Last updated:** [15 July 2025 03:25 UTC](https://forum.access-hive.org.au/t/shapely-fails-to-import-in-analysis3-25-04-undefined-symbol-geosgeom-getextent-r/4518 "2025-07-15T03:25:30Z")
Hi team, This environment was working yesterday, but today I’m seeing this error in analysis3-25.04: ImportError: shapely/lib.cpython-311-x86\_64-linux-gnu.so: undefined symbol: GEOSGeom\_getExtent\_r Traceback: -----… --- ## [Analysis3 and era5grib](https://forum.access-hive.org.au/t/analysis3-and-era5grib/4620)
**Author:** [@traupach](https://forum.access-hive.org.au/u/traupach)\ **Replies:** 6\ **Last updated:** [2 July 2025 07:27 UTC](https://forum.access-hive.org.au/t/analysis3-and-era5grib/4620 "2025-07-02T07:27:49Z")
Hi all, I’ve switched to the new xp65 version of analysis3 Conda environment, but I’m having trouble finding era5grib in the newest versions. I see that era5grib is included in analysis3 24.12 but not in 25.01 (in xp65… --- ## [Running xp65 analysis on ARE](https://forum.access-hive.org.au/t/running-xp65-analysis-on-are/4419)
**Author:** [@Paul.Gregory](https://forum.access-hive.org.au/u/Paul.Gregory)\ **Replies:** 10\ **Last updated:** [15 June 2025 06:48 UTC](https://forum.access-hive.org.au/t/running-xp65-analysis-on-are/4419 "2025-06-15T06:48:22Z")
Hi all. Has anyone managed to run the xp65 analysis3 environment on ARE yet? You could load hh5 analysis3 by specifying as all the environments are present in /g/data/hh5/public/apps/miniconda3/envs/. The xp65 dir… --- ## [How should ACCESS-NRI deploy Mule?](https://forum.access-hive.org.au/t/how-should-access-nri-deploy-mule/4592)
**Author:** [@paulleopardi](https://forum.access-hive.org.au/u/paulleopardi)\ **Replies:** 0\ **Last updated:** [6 June 2025 13:30 UTC](https://forum.access-hive.org.au/t/how-should-access-nri-deploy-mule/4592 "2025-06-06T13:30:23Z")
See previous discussion in UM partnership Mule repository and working practices Issues when transitioning from hh5 to xp65 in suite runs ACCESS-NRI Analysis3 Conda Environments – New Release Announcement Request to add… --- ## [Xp65 on ARE VDI - unable to call on /opt/conda/\*](https://forum.access-hive.org.au/t/xp65-on-are-vdi-unable-to-call-on-opt-conda/4442)
**Author:** [@mblack](https://forum.access-hive.org.au/u/mblack)\ **Replies:** 8\ **Last updated:** [20 May 2025 02:33 UTC](https://forum.access-hive.org.au/t/xp65-on-are-vdi-unable-to-call-on-opt-conda/4442 "2025-05-20T02:33:19Z")
Hi all, I am experiencing an issue when trying to run xp65 analysis3 within ARE VDI. I have followed the helpful instructions (inc. adding gdata/xp65 under Storage). When I attempt to execute python from the VDI termin… --- ## [Pygmt on xp65](https://forum.access-hive.org.au/t/pygmt-on-xp65/4516)
**Author:** [@dpath2o](https://forum.access-hive.org.au/u/dpath2o)\ **Replies:** 4\ **Last updated:** [19 May 2025 23:11 UTC](https://forum.access-hive.org.au/t/pygmt-on-xp65/4516 "2025-05-19T23:11:56Z")
Hi, attempting to switch over to xp65 (module use /g/data/xp65/public/modules instead of hh5), but ran into this issue after “pip install pygmt” --------------------------------------------------------------------------… --- ## [Using dask jobqueue with xp65 conda env](https://forum.access-hive.org.au/t/using-dask-jobqueue-with-xp65-conda-env/4473)
**Author:** [@ag0498](https://forum.access-hive.org.au/u/ag0498)\ **Replies:** 17\ **Last updated:** [19 May 2025 08:00 UTC](https://forum.access-hive.org.au/t/using-dask-jobqueue-with-xp65-conda-env/4473 "2025-05-19T08:00:58Z")
Hi all. Hopefully someone has PBS clusters working with xp65. I’m unable to do so. With analysis-25.03 or 25.04 I get warnings about mismatched versions (varies a bit though): 2025-05-02 16:39:06,372 - distributed.wo… --- ## [Dask bag crashing in xp65 env (but wasn't in hh5)](https://forum.access-hive.org.au/t/dask-bag-crashing-in-xp65-env-but-wasnt-in-hh5/4461)
**Author:** [@jpeter](https://forum.access-hive.org.au/u/jpeter)\ **Replies:** 19\ **Last updated:** [16 May 2025 00:34 UTC](https://forum.access-hive.org.au/t/dask-bag-crashing-in-xp65-env-but-wasnt-in-hh5/4461 "2025-05-16T00:34:54Z")
Dear NRI help, I am using dask bag to read multiple files in parallel. This code was working on the hh5 environment, however, crashes on the xp65 env. Here are the pertinent fragments of code: from dask import compute… --- ## [Virtual environment built on top of xp65 conda fails with segmentation fault during module import](https://forum.access-hive.org.au/t/virtual-environment-built-on-top-of-xp65-conda-fails-with-segmentation-fault-during-module-import/4462)
**Author:** [@Paul.Gregory](https://forum.access-hive.org.au/u/Paul.Gregory)\ **Replies:** 4\ **Last updated:** [2 May 2025 02:39 UTC](https://forum.access-hive.org.au/t/virtual-environment-built-on-top-of-xp65-conda-fails-with-segmentation-fault-during-module-import/4462 "2025-05-02T02:39:02Z")
Hello all. The WCRP global hackathon in May 2025 uses data stored in the healpix format : The required python libraries to load this data are healpy and ezygems. I followed standard procedures to build a virtual e… --- ## [Install COSIMA cookbook in xp65 conda](https://forum.access-hive.org.au/t/install-cosima-cookbook-in-xp65-conda/4420)
**Author:** [@adele-morrison](https://forum.access-hive.org.au/u/adele-morrison)\ **Replies:** 6\ **Last updated:** [17 April 2025 02:12 UTC](https://forum.access-hive.org.au/t/install-cosima-cookbook-in-xp65-conda/4420 "2025-04-17T02:12:56Z")
We have been told to start using the xp65 conda environment and that hh5 won’t work after the end of May. However many of our COSIMA recipes still have not been updated to use Intake. We hope to finish this process at th… --- ## [ACCESS-NRI Analysis3 Conda Environments – New Release Announcement](https://forum.access-hive.org.au/t/access-nri-analysis3-conda-environments-new-release-announcement/4377)
**Author:** [@rbeucher](https://forum.access-hive.org.au/u/rbeucher)\ **Replies:** 0\ **Last updated:** [2 April 2025 10:37 UTC](https://forum.access-hive.org.au/t/access-nri-analysis3-conda-environments-new-release-announcement/4377 "2025-04-02T10:37:37Z")
:rocket: :rocket: Announcing the New ACCESS-NRI conda/analysis3 Environments We are pleased to announce that the ACCESS-NRI conda environments, including the analysis3 environment formerly maintained by CLEX on project … --- ## [PAYU interfering with mamba](https://forum.access-hive.org.au/t/payu-interfering-with-mamba/4187)
**Author:** [@pearseb](https://forum.access-hive.org.au/u/pearseb)\ **Replies:** 5\ **Last updated:** [20 February 2025 22:17 UTC](https://forum.access-hive.org.au/t/payu-interfering-with-mamba/4187 "2025-02-20T22:17:00Z")
Hi ACCESS-NRI hard working people, The new payu version is interfering with my creation of conda environments, for which I use mamba as a faster alternative to conda. When I enter into Gadi, I always do the following: … --- ## [Hh5 scratch and analysis3 environment](https://forum.access-hive.org.au/t/hh5-scratch-and-analysis3-environment/3965)
**Author:** [@Michael\_Barnes](https://forum.access-hive.org.au/u/Michael_Barnes)\ **Replies:** 5\ **Last updated:** [6 December 2024 01:33 UTC](https://forum.access-hive.org.au/t/hh5-scratch-and-analysis3-environment/3965 "2024-12-06T01:33:27Z")
I am trying to pip install packages on my user in the analysis3 environment on hh5. However, I get errors relating to disk quota. When looking at the at the hh5 scratch, I noticed that it seems to be full. Would this be … --- ## [How to create a personal Conda environment on Gadi when you really need one?](https://forum.access-hive.org.au/t/how-to-create-a-personal-conda-environment-on-gadi-when-you-really-need-one/1727)
**Author:** [@paulleopardi](https://forum.access-hive.org.au/u/paulleopardi)\ **Replies:** 12\ **Last updated:** [19 January 2024 04:25 UTC](https://forum.access-hive.org.au/t/how-to-create-a-personal-conda-environment-on-gadi-when-you-really-need-one/1727 "2024-01-19T04:25:53Z")
Hello, I have been using a personal Conda environment on Gadi to organize and run IETF-Robose Tractive, Reposurgeon and related software to migrate Subversion repositories and Trac to GitHub. Yesterday, when I tried to … --- ## [ShellCheck - A shell script static analysis tool - Can we add this to the conda environment?](https://forum.access-hive.org.au/t/shellcheck-a-shell-script-static-analysis-tool-can-we-add-this-to-the-conda-environment/1094)
**Author:** [@griff](https://forum.access-hive.org.au/u/griff)\ **Replies:** 3\ **Last updated:** [17 August 2023 03:58 UTC](https://forum.access-hive.org.au/t/shellcheck-a-shell-script-static-analysis-tool-can-we-add-this-to-the-conda-environment/1094 "2023-08-17T03:58:40Z")
Increasingly, we are trying to use pipelines for checking our code and scripts. It appears that shellcheck is available in the NCI pipeline (gitlab-ci.yml) and it would be great to be able to access this on the commandl… --- ## [Favourite Github Action for building/publishing a conda package](https://forum.access-hive.org.au/t/favourite-github-action-for-building-publishing-a-conda-package/747)
**Author:** [@dougiesquire](https://forum.access-hive.org.au/u/dougiesquire)\ **Replies:** 5\ **Last updated:** [10 May 2023 06:16 UTC](https://forum.access-hive.org.au/t/favourite-github-action-for-building-publishing-a-conda-package/747 "2023-05-10T06:16:09Z")
Does anyone out there have a favourite Github Action for building/publishing a conda package to Anaconda? There’re a few out there and I’m curious whether anyone has had good/bad experiences with any of them (looking at … --- ## [Data/stats capture for analytics](https://forum.access-hive.org.au/t/data-stats-capture-for-analytics/104)
**Author:** [@Aidan](https://forum.access-hive.org.au/u/Aidan)\ **Replies:** 1\ **Last updated:** [3 November 2022 01:04 UTC](https://forum.access-hive.org.au/t/data-stats-capture-for-analytics/104 "2022-11-03T01:04:17Z")
Most of the information exposed through the Grafana analytics platform is obtained by running NCI tools daily on a daily basis, using the Jenkins instance running on the same VM as the Grafana tools. The Jenkins job sta…