Um2netcdf4 not working after maintenance (change to /g/data3 alias)

Technical
, ,
1

The issue is here which we have no authority to modify. Need some help!!

under this file:
/g/data/access/projects/access/modules/pythonlib/um2netcdf4/2.1

#%Module

set help “Conversion of UM fieldsfiles to netCDF”
set prefix ~access/apps/pythonlib/um2netcdf4/2.1
set install-contact “martin.dix@csiro.au”
set install-date “2023-01-16”
set url “https://bitbucket.csiro.au/users/dix043/src”

conflict pythonlib/um2netcdf4

if ![ is-loaded conda/analysis3 ] {
module use /g/data3/hh5/public/modules
module load conda/analysis3
}

prepend-path PYTHONPATH $prefix
prepend-path PATH $prefix
setenv UMDIR /g/data/access/projects/access/umdir

We might have quite a lot this kind of files. We need help to modify them.

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2

Thanks for the heads up. There are 4 affected files in ~access/modules.:

[dr4292@gadi-login-09 modules]$ grep -r data3 .
./pythonlib/um2netcdf4/2.1:    module use /g/data3/hh5/public/modules
./pythonlib/um2netcdf4/2.0:    module use /g/data3/hh5/public/modules
./pythonlib/umfile_utils/cmip6:    module use /g/data3/hh5/public/modules
./pythonlib/umfile_utils/access_cm2:    module use /g/data3/hh5/public/modules

The permissions are set such that only @MartinDix can fix this. Fortunately it seems that due to ‘popular demand’ NCI has re-instated the /g/data3 symlink as of 11:15am today. Still this should be fixed, we can’t assume the symlink will be around forever.

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3

Hi Arnold,

the um2necdf script will be available in the future within other set of tools to manipulate ACCESS ancillary files.
For now, since it’s still in a pre-release form, you can do the following:

  1. Load the conda/analysis3-unstable module:
module unload conda
module load conda/analysis3-unstable
  1. clone this repo:
git clone https://github.com/ACCESS-NRI/amami.git
  1. Use the um2nc.py tool under amami/amami/um2nc.py
    For complete usage instructions, run um2nc.py -h

Note: The tool is still in a pre-release state (that’s why it’s not fully on Gadi yet), but should work fine with most of the files.

Hope that helps
Davide

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