MATLAB kernel for Jupyter

Technical
,
1

MathWorks now officially support a MATLAB kernel for Jupyter. Details here:

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2

This could be a nice stepping-stone for people looking to transition from MATLAB to Python, for example - thanks MathWorks!

3

Awesome! Would we be able to get it on the Gadi VDI?

4

You could try creating your own conda environment containing the required packages and running on the NCI ARE JupyterLab App? I don’t have a Matlab license or any experience running Matlab on NCI so I can’t test if this works, but you could give it a try:

  1. Follow the instructions under " Creating personal environments" here to create your own conda environment with the required packages. That is, create the ~/.condarc file as described and then run

    module use /g/data/hh5/public/modules
conda create -n matlab -c conda-forge jupyterlab
conda activate matlab
pip install jupyter-matlab-proxy

  2. Start a JupyterLab session via the ARE App. In addition to the standard fields, I presume you’ll have to select your Matlab software group under Software, e.g.:

    Screenshot 2023-03-21 at 9.22.49 pm
    Screenshot 2023-03-21 at 9.22.49 pm980×160 10.6 KB

    and to add Matlab modules in the Advanced Options under Modules, e.g.:

    Screenshot 2023-03-21 at 9.24.13 pm
    Screenshot 2023-03-21 at 9.24.13 pm970×200 17.3 KB

    You’ll also need to tell the ARE to use the conda environment you created (also in Advanced Options):

    Screenshot 2023-03-21 at 9.27.38 pm
    Screenshot 2023-03-21 at 9.27.38 pm976×546 58.4 KB

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5

Given that NCI officially support MATLAB and they already provide a number of specialised conda environments, I’d say emailing help@nci.org.au would be a good option to see if they have plans to support this use case, or are willing to do so in the future.

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